plotAverageGeneCount: plotAverageGeneCount
In IMB-Computational-Genomics-Lab/ascend: ascend - Analysis of Single Cell Expression, Normalisation, and Differential expression
Description
Usage
Arguments
Value
Examples
Description
Generates a histogram of average counts for each gene.
Usage
1
plotAverageGeneCount(object, metric = c("average", "log2", "log10"))
Arguments
object
An EMSet.
metric
Scale to plot data by - average (DEFAULT), log2 or log10.
Value
A ggplot2 glob containing the histogram.
Examples
1
2
3
4
5
6
7
8
9
10
11
# Load EMSet
EMSet <- ascend::raw_set
# Plot average gene count
average_genes <- plotAverageGeneCount(EMSet, metric = "average")
# Plot log2 average gene count
average_gene_2 <- plotAverageGeneCount(EMSet, metric = "log2")
# Plot log10 average gene count
average_gene_10 <- plotAverageGeneCount(EMSet, metric = "log10")
IMB-Computational-Genomics-Lab/ascend documentation built on Aug. 29, 2019, 4:10 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Examples
Description
Generates a histogram of average counts for each gene.
Usage
1 | plotAverageGeneCount(object, metric = c("average", "log2", "log10"))
|
Arguments
object |
An EMSet. |
metric |
Scale to plot data by - average (DEFAULT), log2 or log10. |
Value
A ggplot2 glob containing the histogram.
Examples
1 2 3 4 5 6 7 8 9 10 11 | # Load EMSet
EMSet <- ascend::raw_set
# Plot average gene count
average_genes <- plotAverageGeneCount(EMSet, metric = "average")
# Plot log2 average gene count
average_gene_2 <- plotAverageGeneCount(EMSet, metric = "log2")
# Plot log10 average gene count
average_gene_10 <- plotAverageGeneCount(EMSet, metric = "log10")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.