convertGeneID: convertGeneID
In IMB-Computational-Genomics-Lab/ascend: ascend - Analysis of Single Cell Expression, Normalisation, and Differential expression
Description
Usage
Arguments
Value
Examples
Description
Switches gene identifiers used in the EMSet to the identifiers stored in a
column of rowInfo.
Usage
1
2
3
4
convertGeneID(object, new.annotation)
## S4 method for signature 'EMSet'
convertGeneID(object, new.annotation = NULL)
Arguments
object
EMSet
new.annotation
Name of the column where the new set of identifiers
are stored in rowInfo
Value
An EMSet with genes swapped to identifiers stored in specified column
of colInfo.
Examples
1
2
3
4
5
# Load data
x <- ascend::raw_set
# Switch identifiers
x <- convertGeneID(x, new.annotation = "ensembl_gene_id")
IMB-Computational-Genomics-Lab/ascend documentation built on Aug. 29, 2019, 4:10 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Examples
Description
Switches gene identifiers used in the EMSet to the identifiers stored in a column of rowInfo.
Usage
1 2 3 4 | convertGeneID(object, new.annotation)
## S4 method for signature 'EMSet'
convertGeneID(object, new.annotation = NULL)
|
Arguments
object |
EMSet |
new.annotation |
Name of the column where the new set of identifiers are stored in rowInfo |
Value
An EMSet with genes swapped to identifiers stored in specified column of colInfo.
Examples
1 2 3 4 5 | # Load data
x <- ascend::raw_set
# Switch identifiers
x <- convertGeneID(x, new.annotation = "ensembl_gene_id")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.