tppDefaultTheme: Default ggplot theme for melting curve plots.

In DoroChilds/TPP: Analyze thermal proteome profiling (TPP) experiments

Description

Default theme to be passed to the gplots produced by the TPP package.

Usage

tppDefaultTheme()

Details

Internally, the theme is used as an argument for the function ggplot2::theme_set in order specify the appearance of the melting curve plots.

The specified plot properties include bold font and increased font size for axis labels and title, as well as a 90 degree angle for y axis labels.

Value

ggplot theme with default settings for melting plot appearance.

Examples

# Import data:
data(hdacTR_smallExample)
tpptrData <- tpptrImport(configTable=hdacTR_config, data=hdacTR_data)
# Obtain template with default settings:
normRequirements <- tpptrDefaultNormReqs()
print(normRequirements)
# Relax filter on the 10th fold change column for 
# normalization set production:
normRequirements$fcRequirements[3,3] <- 0.25
# Perform normalization:
tpptrNorm <- tpptrNormalize(data=tpptrData, normReqs=)

DoroChilds/TPP documentation built on Oct. 31, 2021, 4:38 a.m.