tpp2dPlotQChist: Plot quality control histograms

In DoroChilds/TPP: Analyze thermal proteome profiling (TPP) experiments

Description

Plots quality control histograms of pEC50 values of reference dataset and indicates the pEC50 values of the 2D-TPP experiment

Usage

tpp2dPlotQChist(
  configFile = NULL,
  resultTable = NULL,
  resultPath = NULL,
  trRef = NULL,
  fcStr = "rel_fc_",
  idVar = "gene_name",
  qualColName = "qupm"
)

Arguments

configFile	data frame or system path to table that specifies important details of the 2D-TPP experiment
resultTable	data.frame containing the results of a CCR analysis of 2D-TPP data
resultPath	character string containing a valid system path to which the the qc plots will be written
trRef	character string with a link to a TPP-TR reference object RData file
fcStr	character string indicating how columns that will contain the actual fold change values are called.
idVar	character string indicating name of the columns containing the unique protein identifiers
qualColName	character string indicating which column contain protein identification quality measures

Value

A pdf with various quality control plots for a specified 2D-TPP data set

DoroChilds/TPP documentation built on Oct. 31, 2021, 4:38 a.m.