API for CshlSiepelLab/tuSelecter2
Deconvolution of Expression for Nascent RNA Sequencing Data
| Global functions | |
|---|---|
| .onLoad | Source code |
| add_data | Man page |
| add_data,transcript_quantifier-method | Man page |
| apply_bigwig_seqinfo | Man page Source code |
| apply_shape_profile | Man page |
| apply_shape_profile,transcript_quantifier,transcript_shape_profi | Man page |
| assert_chromosome_exists | Man page Source code |
| cache_create_dir | Man page Source code |
| cache_defaults | Man page Source code |
| cache_get_dir | Man page Source code |
| cache_set_dir | Man page Source code |
| collect_tss_features | Man page Source code |
| covered_bases | Man page Source code |
| create_bins | Man page Source code |
| create_model_masks | Man page Source code |
| create_transcript_models | Man page Source code |
| download_txdb | Man page Source code |
| fit | Man page |
| fit,transcript_quantifier-method | Man page |
| gene_abundance | Man page |
| gene_abundance,transcript_quantifier-method | Man page |
| get_abundance | Man page Source code |
| get_data | Man page |
| get_data,character-method | Man page |
| get_data,transcript_quantifier-method | Man page |
| get_masks | Man page Source code |
| get_transcribed_regions | Man page Source code |
| get_transcripts | Man page Source code |
| get_tx_id | Man page Source code |
| group_trancript_models | Man page Source code |
| group_transcripts | Man page Source code |
| is_length_two_vector | Man page Source code |
| is_matrix_list | Man page Source code |
| is_strand_vector | Man page Source code |
| is_vector_list | Man page Source code |
| label_transcripts | Man page Source code |
| labeled_feature_set | Man page Source code |
| list_cached_txdb | Man page Source code |
| load_txdb | Man page Source code |
| locus_statistics | Man page Source code |
| locus_variance_explained | Man page Source code |
| mask_data | Man page Source code |
| mask_transcripts | Man page Source code |
| matrix_list_dim_equal | Man page Source code |
| model_agreement | Man page Source code |
| plot_model | Man page Source code |
| predict_inactive_transcripts | Man page Source code |
| predict_locus | Man page Source code |
| predict_transcripts | Man page Source code |
| reduce_transcript_models | Man page Source code |
| rescale_fixed_width_position | Man page Source code |
| save_txdb | Man page Source code |
| seqv | Man page |
| set_datatrack_ylim | Man page Source code |
| show,transcript_quantifier-method | Man page |
| split_path | Man page Source code |
| strip_loess | Man page Source code |
| sum_squares_grad | Man page Source code |
| sum_squares_lasso | Man page Source code |
| summarize_bigwig | Man page |
| summarize_bigwig,ANY,GRanges-method | Man page |
| summarize_bigwig,ANY,GRangesList-method | Man page |
| total_coverage | Man page Source code |
| transcript_abundance | Man page |
| transcript_abundance,transcript_quantifier-method | Man page |
| transcript_quantifier | Man page Source code |
| transcript_quantifier-class | Man page |
| transcript_quantifier_valid | Man page Source code |
| transcript_shape_profile | Man page Source code |
| transcript_shape_profile-class | Man page |
| tss_predictor | Man page Source code |
| tx_variance_explained | Man page Source code |
| upstream_polymerase_ratio | Man page Source code |
| view | Man page |
| view,transcript_shape_profile-method | Man page |
| view_available_txdb | Man page Source code |
| window_regions | Man page Source code |
