get_transcripts: Get target transcripts

In CshlSiepelLab/tuSelecter2: Deconvolution of Expression for Nascent RNA Sequencing Data

Description

Retrives transcripts corresponding to a gene or genomic region as a GRanges-class object

Usage

get_transcripts(
  tq,
  gene_name = NULL,
  chrom = NULL,
  start = NULL,
  end = NULL,
  strand = NULL
)

Arguments

tq	A transcript_quantifier-class object
gene_name	Name of your query gene. Only works if gene ids were given to the transcript_quantifier-class object
chrom	the chromosome of your query region (single value)
start	the start position of your query region (single value)
end	the end position of your query region (single value)
strand	the strand specificity of your query region (default: ANY)

Value

a GRanges-class object

CshlSiepelLab/tuSelecter2 documentation built on July 18, 2021, 5:09 p.m.