download_txdb: Download transcript model from biomart

In CshlSiepelLab/tuSelecter2: Deconvolution of Expression for Nascent RNA Sequencing Data

Description

This function creates a TxDb object from the biomaRt ensembl database, converts it to a TxDb, and returns it (WARNING: this may take a few minutes.) To view available species for a given ensembl version run view_available_txdb().

Usage

download_txdb(species, ensembl_version = NULL, cache = TRUE)

Arguments

species	the species to download the TxDb for. Use the first letter of the genus and the full species as one string (e.g. homo sapiens -> hsapiens).
ensembl_version	The Ensembl release version. Defaults to current release.
cache	whether to automatically cache the downloaded TxDb (Default: TRUE)

Value

TxDb object

CshlSiepelLab/tuSelecter2 documentation built on July 18, 2021, 5:09 p.m.