plot_two_tree: Plot two trees in one plot

In pctax: Professional Comprehensive Omics Data Analysis

Plot two trees in one plot

Description

Plot two trees in one plot

Usage

plot_two_tree(
  tree1,
  tree2,
  edge_df = NULL,
  tree2_x = 10,
  filter_link = FALSE,
  tree1_param = list(),
  tree2_param = list(),
  line_param = list(),
  tree1_tip = FALSE,
  tip1_param = list(),
  tree2_tip = FALSE,
  tip2_param = list(),
  tree1_highlight = NULL,
  highlight1_param = list(),
  highlight1_scale = NULL,
  tree2_highlight = NULL,
  highlight2_param = list(),
  highlight2_scale = ggplot2::scale_fill_hue(na.value = NA)
)

Arguments

tree1	phylo object
tree2	phylo object
edge_df	dataframe with edge information, containing "from" and "to" columns
tree2_x	x position of tree2
filter_link	filter the link between tree1 and tree2
tree1_param	parameters for geom_tree
tree2_param	parameters for geom_tree
line_param	parameters for geom_line
tree1_tip	tree tip label
tip1_param	parameters for geom_tiplab
tree2_tip	tree tip label
tip2_param	parameters for geom_tiplab
tree1_highlight	tree1 highlight data.frame
highlight1_param	parameters for geom_hilight
highlight1_scale	scale_fill_ for highlight1
tree2_highlight	tree2 highlight data.frame
highlight2_param	parameters for geom_hilight
highlight2_scale	scale_fill_ for highlight2

Value

ggplot object

Examples

if (requireNamespace("ggtree")) {
  data(otutab, package = "pcutils")
  df2tree(taxonomy[1:50, ]) -> tax_tree
  df2tree(taxonomy[51:100, ]) -> tax_tree2
  link <- data.frame(from = sample(tax_tree$tip.label, 20), to = sample(tax_tree2$tip.label, 20))
  plot_two_tree(tax_tree, tax_tree2, link)
}

pctax documentation built on April 4, 2025, 2:26 a.m.