plot.b_res: Plot a b_res

In pctax: Professional Comprehensive Omics Data Analysis

Plot a b_res

Description

Plot a b_res

Usage

## S3 method for class 'b_res'
plot(
  x,
  Group,
  metadata = NULL,
  Group2 = NULL,
  mode = 1,
  bi = FALSE,
  Topn = 10,
  rate = 1,
  margin = FALSE,
  margin_label = TRUE,
  permanova_res = NULL,
  text_param = list(),
  box_margin = TRUE,
  box_param = list(),
  pal = NULL,
  sample_label = TRUE,
  stat_ellipse = TRUE,
  coord_fix = FALSE,
  bi_text_size = 3,
  ...
)

Arguments

x	a b_res object
Group	group vector for color
metadata	metadata contain Group
Group2	mapping point shape
mode	plot mode:1~3
bi	plot variables segments?
Topn	how many variables to show?
rate	segments length rate
margin	plot the margin boxplot?
margin_label	margin_label, TRUE
permanova_res	permanova result
text_param	text_param for annotate
box_margin	margin plot box or density?
box_param	box_param for group_box
pal	colors for group
sample_label	plot the labels of samples?
stat_ellipse	plot the stat_ellipse?
coord_fix	fix the coordinates y/x ratio
bi_text_size	biplot text size
...	add

Value

a ggplot

See Also

b_analyse

pctax documentation built on May 29, 2024, 10:03 a.m.