grap_p_test: Performs graph-based permutation tests
In pctax: Professional Comprehensive Omics Data Analysis

grap_p_test

R Documentation

Performs graph-based permutation tests

Description

Performs graph-based permutation tests

Usage

grap_p_test(otutab, metadata, group = "Group", nperm = 999, ...)

Arguments

`otutab`	an otutab data.frame, samples are columns, taxs are rows.
`metadata`	metadata
`group`	one group name in columns of metadata
`nperm`	numbers of permutations to perform
`...`	additional

Value

ggplot

Examples


if (requireNamespace("phyloseqGraphTest") && requireNamespace("phyloseq")) {
  data(otutab, package = "pcutils")
  grap_p_test(otutab, metadata, "Group")
}

pctax documentation built on May 29, 2024, 10:03 a.m.