micro_sbatch: Microbiome sbatch
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micro_sbatch

R Documentation

Microbiome sbatch

Description

Microbiome sbatch

Usage

micro_sbatch(
  work_dir = "/share/home/jianglab/pengchen/work/asthma/",
  step = "fastp",
  all_sample_num = 40,
  array = 1,
  partition = "cpu",
  cpus_per_task = 1,
  mem_per_cpu = "2G"
)

Arguments

`work_dir`	work_dir
`step`	"fastp","rm_human","megahit","prodigal","salmon-quant",...
`all_sample_num`	all sample number
`array`	array number
`partition`	partition
`cpus_per_task`	cpus_per_task
`mem_per_cpu`	mem_per_cpu, "2G"