as.b_dist: Transfer dist to b_dist

In pctax: Professional Comprehensive Omics Data Analysis

Transfer dist to b_dist

Description

Transfer dist to b_dist

Plot dist

Plot b_dist

Usage

as.b_dist(dist, group_df = NULL)

## S3 method for class 'dist'
plot(x, group_df = NULL, ...)

## S3 method for class 'b_dist'
plot(x, mode = 1, c_group = "inter", ...)

Arguments

dist	a dist object
group_df	a dataframe with rowname same to dist and one group column
x	a b_dist
...	additional
mode	1~3
c_group	"inter" or "intra" or both to plot

Value

a b_dist with annotation by group

a pheatmap

a ggplot or pheatmap

Examples

data(otutab, package = "pcutils")
mat_dist(otutab) %>% as.b_dist(., group_df = metadata["Group"]) -> aa
plot(aa)
plot(aa, mode = 2)

pctax documentation built on May 29, 2024, 10:03 a.m.