plotCall: Barplot of Percent Present and Absent Calls for Device
In xps: Processing and Analysis of Affymetrix Oligonucleotide Arrays including Exon Arrays, Whole Genome Arrays and Plate Arrays

Description Usage Arguments Details Author(s) See Also

Creates a barplot of percent Present/Marginal/Absent calls for the selected device.

plotCall(x,
         beside  = TRUE,
         names   = "namepart",
         col     = c("red","green","blue"),
         legend  = c("P","M","A"),
         ylim    = c(0,100),
         ylab    = "detection call [%]",
         las     = 2,
         dev     = "screen",
         outfile = "CallPlot",
         w       = 800,
         h       = 540,
         ...)

`x`	object of class `CallTreeSet`.
`beside`	logical. If `FALSE`, the columns of height are portrayed as stacked bars, and if `TRUE` the columns are portrayed as juxtaposed bars.
`names`	optional vector of sample names.
`col`	color for P/M/A bars
`legend`	legend for the plot, defaults to P/M/A.
`ylim`	the y limits of the plot.
`ylab`	a label for the y axis.
`las`	the style of axis labels.
`dev`	graphics device to plot to, i.e. one of “screen”, “jpeg”,“png”, “pdf” or “ps”.
`outfile`	the name of the output file.
`w`	the width of the device in pixels.
`h`	the height of the device in pixels.
`...`	optional arguments to be passed to `barplot`.

Creates a barplot of percent Present/Marginal/Absent calls.

For names=NULL full column names of slot data will be displayed while for names="namepart" column names will be displayed without name extension. If names is a vector of column names, only these columns will displayed as callplot.

Christian Stratowa

callplot

xps documentation built on Nov. 8, 2020, 6 p.m.