Comprehensive reporting of droplet QC metrics: computing barcode ranks with barcodeRank"

In singleCellTK: Comprehensive and Interactive Analysis of Single Cell RNA-Seq Data

require(umap)
require(ggplot2)
require(SingleCellExperiment)
require(singleCellTK)

sce<-params$object

   plotsBarcodeRank<- suppressWarnings(plotBarcodeRankScatter(sce))
    i="BarcodeRanks"
    cat(paste0('# ', i, ' {.tabset .tabset-fade} \n\n'))
    cat(paste0('## BarcodeRanks, Total UMI counts vs Rank \n\n'))
    plotsBarcodeRank
    cat(paste0('## Session info \n\n'))
    sce@metadata$runBarcodeRankDrops

description_runBarcodeRank <- descriptionBarcodeRank()

{.unlisted .unnumbered .toc-ignore}

r description_runBarcodeRank

singleCellTK documentation built on Nov. 8, 2020, 5:21 p.m.