projFuncPos: Projection of a Vector to a Non-negative Sparse Vector

In fabia: FABIA: Factor Analysis for Bicluster Acquisition

Description

projFuncPos: R implementation of projFuncPos.

Usage

projFuncPos(s, k1, k2)

Arguments

s	data vector.
k1	sparseness, l1 norm constraint.
k2	l2 norm constraint.

Details

The projection minimize the Euclidean distance to the original vector given an l_1-norm and an l_2-norm and enforcing non-negativity.

The projection is a convex quadratic problem which is solved iteratively where at each iteration at least one component is set to zero.

In the applications, instead of the l_1-norm a sparseness measurement is used which relates the l_1-norm to the l_2-norm:

Implementation in R.

Value

v	non-negative sparse projected vector.

Author(s)

Sepp Hochreiter

References

Patrik O. Hoyer, ‘Non-negative Matrix Factorization with Sparseness Constraints’, Journal of Machine Learning Research 5:1457-1469, 2004.

See Also

fabia, fabias, fabiap, fabi, fabiasp, mfsc, nmfdiv, nmfeu, nmfsc, extractPlot, extractBic, plotBicluster, Factorization, projFuncPos, projFunc, estimateMode, makeFabiaData, makeFabiaDataBlocks, makeFabiaDataPos, makeFabiaDataBlocksPos, matrixImagePlot, fabiaDemo, fabiaVersion

Examples

#---------------
# DEMO
#---------------

size <- 30
sparseness <- 0.7

s <- as.vector(rnorm(size))
sp <- sqrt(1.0*size)-(sqrt(1.0*size)-1.0)*sparseness

ss <- projFuncPos(s,k1=sp,k2=1)

s
ss

fabia documentation built on Nov. 8, 2020, 8:09 p.m.