readcountExpBoxplot: Barplot of percentage of reads falling into expression bins

In dupRadar: Assessment of duplication rates in RNA-Seq datasets

Description

readcountExpBoxplot Barplot of percentage of reads falling into expression bins

Usage

readcountExpBoxplot(DupMat, stepSize = 0.05, ...)

Arguments

DupMat	The duplication matrix calculated by analyzeDuprates
stepSize	The number of bars to be shown
...	Other parameters sent to barplot()

Details

This function makes a barplot of percentage of reads falling into expression bins

Value

nothing Other parameters sent to barplot()

Examples

# dm is a duplication matrix calculated by analyzeDuprates:
# R> dm <- analyzeDuprates(bamDuprm,gtf,stranded,paired,threads)
attach(dupRadar_examples)


# barplot of percentage of reads falling into expression bins
readcountExpBoxplot(DupMat=dm)

dupRadar documentation built on Nov. 8, 2020, 5:41 p.m.