getDynamicRange: Dynamic range
In dupRadar: Assessment of duplication rates in RNA-Seq datasets
Description
Usage
Arguments
Details
Value
Examples
View source: R/getDynamicRange.R
Description
getDynamicRange Calculate the dynamic range of the RNAseq experiment
Usage
1
Arguments
dm
The duplication matrix calculated by analyzeDuprates
Details
This function calculates the dynamic range of the RNAseq eperiment
Value
A list with 2 elements, containing the dynamic range counting all
reads and the dynamic range after removing duplicates.
Examples
1
2
3
4
5
6
# dm is a duplication matrix calculated by analyzeDuprates:
# R> dm <- analyzeDuprates(bamDuprm,gtf,stranded,paired,threads)
attach(dupRadar_examples)
# calculate the dynamic range
getDynamicRange(dm)
Example output
$dynrange.all
[1] 31153.04
$dynrange.duprm
[1] 3343.27
dupRadar documentation built on Nov. 8, 2020, 5:41 p.m.
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Description Usage Arguments Details Value Examples
View source: R/getDynamicRange.R
Description
getDynamicRange Calculate the dynamic range of the RNAseq experiment
Usage
1 |
Arguments
dm |
The duplication matrix calculated by |
Details
This function calculates the dynamic range of the RNAseq eperiment
Value
A list with 2 elements, containing the dynamic range counting all reads and the dynamic range after removing duplicates.
Examples
1 2 3 4 5 6 | # dm is a duplication matrix calculated by analyzeDuprates:
# R> dm <- analyzeDuprates(bamDuprm,gtf,stranded,paired,threads)
attach(dupRadar_examples)
# calculate the dynamic range
getDynamicRange(dm)
|
Example output
$dynrange.all
[1] 31153.04
$dynrange.duprm
[1] 3343.27
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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