cumulativeDuprateBarplot: Barplot showing the cumulative read counts fraction

In dupRadar: Assessment of duplication rates in RNA-Seq datasets

Description

cumulativeDuprateBarplot Barplot showing the cumulative read counts fraction

Usage

cumulativeDuprateBarplot(DupMat, stepSize = 0.05, ...)

Arguments

DupMat	The duplication matrix calculated by analyzeDuprates
stepSize	The size of the windows used for plotting
...	Other params sent to barplot

Details

This function makes a barplot showing the cumulative read counts fraction from the duplication matrix calculated by analyzeDuprates.

Value

nothing

Examples

# dm is a duplication matrix calculated by analyzeDuprates:
# R> dm <- analyzeDuprates(bamDuprm,gtf,stranded,paired,threads)
attach(dupRadar_examples)

# call the plot
cumulativeDuprateBarplot(DupMat=dm)

dupRadar documentation built on Nov. 8, 2020, 5:41 p.m.