Files in dupRadar
Assessment of duplication rates in RNA-Seq datasets
.BBSoptions
NEWS
NAMESPACE
DESCRIPTION
LICENSE
build/vignette.rds
data/dupRadar_examples.RData
data/datalist
R/analyzeDuprates.R
R/dupRadar.R
R/getBinRpkMean.R
R/readcountExpBoxplot.R
R/expressionHist.R
R/duprateExpDensPlot.R
R/getDupMatStats.R
R/duprateExpBoxplot.R
R/getDynamicRange.R
R/duprateExpFit.R
R/getDupMatBin.R
R/getBinDuplication.R
R/duprateExpPlot.R
R/markDuplicates.R
R/getRpkBinReadCountFraction.R
R/cumulativeDuprateBarplot.R
R/getRpkCumulativeReadCountFraction.R
R/duprateExpIdentify.R
vignettes/dupRadar.Rmd
vignettes/figures/encode.svg
vignettes/figures/GCcontent.svg
vignettes/figures/GCdependence.png
man/picardMarkDuplicates.Rd
man/getDupMatStats.Rd
man/dupRadar.Rd
man/duprateExpDensPlot.Rd
man/duprateExpIdentify.Rd
man/cumulativeDuprateBarplot.Rd
man/duprateExpPlot.Rd
man/duprateExpBoxplot.Rd
man/expressionHist.Rd
man/analyzeDuprates.Rd
man/dm.Rd
man/getRpkBinReadCountFraction.Rd
man/duprateExpFit.Rd
man/getRpkCumulativeReadCountFraction.Rd
man/getBinDuplication.Rd
man/bamutilMarkDuplicates.Rd
man/markDuplicates.Rd
man/dupRadar_examples.Rd
man/getBinRpkMean.Rd
man/dm.bad.Rd
man/getDupMatBin.Rd
man/getDynamicRange.Rd
man/readcountExpBoxplot.Rd
inst/CITATION
inst/doc/dupRadar.R
inst/doc/dupRadar.Rmd
inst/doc/dupRadar.html
inst/extdata/genes.gtf
inst/extdata/wgEncodeCaltechRnaSeqGm12878R1x75dAlignsRep2V2_duprm.bam
inst/extdata/wgEncodeCaltechRnaSeqGm12878R1x75dAlignsRep2V2.bam.bai
inst/extdata/wgEncodeCaltechRnaSeqGm12878R1x75dAlignsRep2V2.bam
inst/extdata/wgEncodeCaltechRnaSeqGm12878R1x75dAlignsRep2V2_duprm.bam.log
