Files in combi

Compositional omics model based visual integration

R/deriv2LagrangianLatentVarsConstr.R R/scoreFeatureParams.R R/jacLatentVars.R R/getInflLatentVar.R R/checkAlias.R R/addLink.R R/buildEmptyJac.R R/indentPlot.R R/jacLatentVarsConstr.R R/prepareJacMat.R R/buildMarginalOffset.R R/prepareJacMatComp.R R/quasiScoreIndep.R R/seqM.R R/gramSchmidtOrth.R R/buildMu.R R/deriv2LagrangianLatentVars.R R/scoreConfounders.R R/print.combi.R R/plot.combi.R R/estLatentVars.R R/estFeatureParameters.R R/buildCovMat.R R/jacConfoundersComp.R R/prepareScoreMat.R R/buildCentMat.R R/buildOffsetModel.R R/polyHorner.R R/derivLagrangianFeatures.R R/buildConfMat.R R/convPlot.R R/rowMultiply.R R/extractData.R R/extractCoords.R R/trimOnConfounders.R R/derivLagrangianLatentVarsConstr.R R/estOff.R R/checkMeanVarTrend.R R/deriv2LagrangianFeatures.R R/quasiJacIndep.R R/jacFeatures.R R/arrayMult.R R/scoreConfoundersComp.R R/derivLagrangianLatentVars.R R/filterConfounders.R R/influence.combi.R R/data.R R/combi.R R/checkMonotonicity.R R/buildMuMargins.R R/scoreLatentVars.R R/predictSpline.R R/jacConfounders.R R/inflPlot.R R/buildCompMat.R R/estMeanVarTrend.R R/estIndepModel.R vignettes/combi.Rmd man/quasiJacIndep.Rd man/buildConfMat.Rd man/checkMeanVarTrend.Rd man/predictSpline.Rd man/jacLatentVarsConstr.Rd man/buildOffsetModel.Rd man/estLatentVars.Rd man/zhangMetabo.Rd man/jacFeatures.Rd man/filterConfounders.Rd man/buildCompMat.Rd man/influence.combi.Rd man/rowMultiply.Rd man/seqM.Rd man/combi.Rd man/getInflLatentVar.Rd man/addLink.Rd man/buildMuMargins.Rd man/gramSchmidtOrth.Rd man/extractMat.Rd man/jacConfounders.Rd man/jacConfoundersComp.Rd man/deriv2LagrangianLatentVars.Rd man/trimOnConfounders.Rd man/derivLagrangianFeatures.Rd man/polyHorner.Rd man/convPlot.Rd man/scoreFeatureParams.Rd man/extractData.Rd man/prepareJacMat.Rd man/checkMonotonicity.Rd man/deriv2LagrangianFeatures.Rd man/zhangMicrobio.Rd man/zhangMetavars.Rd man/buildMu.Rd man/jacLatentVars.Rd man/inflPlot.Rd man/derivLagrangianLatentVarsConstr.Rd man/prepareScoreMat.Rd man/deriv2LagrangianLatentVarsConstr.Rd man/estOff.Rd man/buildEmptyJac.Rd man/estIndepModel.Rd man/scoreLatentVars.Rd man/buildCentMat.Rd man/prepareJacMatComp.Rd man/print.combi.Rd man/scoreConfoundersComp.Rd man/estMeanVarTrend.Rd man/arrayMult.Rd man/estFeatureParameters.Rd man/scoreConfounders.Rd man/buildMarginalOffset.Rd man/extractCoords.Rd man/scaleCoords.Rd man/derivLagrangianLatentVars.Rd man/plot.combi.Rd man/buildCovMat.Rd man/checkAlias.Rd man/indentPlot.Rd man/quasiScoreIndep.Rd tests/testthat.R tests/testthat/test-rowMultiply.R tests/testthat/test-combiinput.R tests/testthat/test-seqM.R inst/NEWS.md inst/doc/combi.Rmd inst/doc/combi.R inst/scripts/fitScript.R