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inst/scripts/fitScript.R
In combi: Compositional omics model based visual integration
#Here is how the fits in inst/extdata/ZhangFits.RData were generated:
data(Zhang)
#Unconstrained
microMetaboInt = combi(
list("microbiome" = zhangMicrobio, "metabolomics" = zhangMetabo),
distributions = c("quasi", "gaussian"), compositional = c(TRUE, FALSE),
logTransformGaussian = FALSE)
#Constrained
microMetaboIntConstr = combi(
list("microbiome" = zhangMicrobio, "metabolomics" = zhangMetabo),
distributions = c("quasi", "gaussian"), compositional = c(TRUE, FALSE),
logTransformGaussian = FALSE, covariates = zhangMetavars)
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combi documentation built on Nov. 8, 2020, 5:34 p.m.
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#Here is how the fits in inst/extdata/ZhangFits.RData were generated:
data(Zhang)
#Unconstrained
microMetaboInt = combi(
list("microbiome" = zhangMicrobio, "metabolomics" = zhangMetabo),
distributions = c("quasi", "gaussian"), compositional = c(TRUE, FALSE),
logTransformGaussian = FALSE)
#Constrained
microMetaboIntConstr = combi(
list("microbiome" = zhangMicrobio, "metabolomics" = zhangMetabo),
distributions = c("quasi", "gaussian"), compositional = c(TRUE, FALSE),
logTransformGaussian = FALSE, covariates = zhangMetavars)
Try the combi package in your browser
Any scripts or data that you put into this service are public.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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