Files in cellHTS2
Analysis of cell-based screens - revised version of cellHTS
CHANGES
.Rinstignore
NAMESPACE
DESCRIPTION
build/vignette.rds
data/dualCh.rda
data/KcViabSmall.rda
data/KcViab.rda
data/bdgpbiomart.rda
data/oldKcViabSmall.rda
R/glossary.R
R/methods-ROC.R
R/tableOutput.R
R/getMeasureRepAgreement.R
R/rsa.R
R/AllGenerics.R
R/convertOldCellHTS.R
R/adjustVariance.R
R/progressReport.R
R/readHTAnalystData.R
R/gseaModule.R
R/methods-cellHTS.R
R/settings.R
R/screenDescriptionModule.R
R/screenScriptModule.R
R/plateConfModule.R
R/htmlFunctions.R
R/plotSpatialEffects.R
R/envisionPlateReader.R
R/oneRowPerId.R
R/getTopTable.R
R/summarizeReplicates.R
R/plateSummariesModule.R
R/perPlateScaling.R
R/getDynamicRange.R
R/readPlateList.R
R/zzz.R
R/AllClasses.R
R/screenSummaryModule.R
R/checkControls.R
R/imageScreen.R
R/normalizePlates.R
R/writeHTML-methods.R
R/checkColumns.R
R/templateDescriptionFile.R
R/getZfactor.R
R/write.tabdel.R
R/writeReport.R
R/makePlot.R
R/screenResultsModule.R
R/plateListModule.R
vignettes/twoWay.Rnw
vignettes/cellhts2Complete.Rnw
vignettes/cellhts.bib
vignettes/cellhts2.Rnw
vignettes/twoChannels.Rnw
vignettes/Rnw/biomart.tex
vignettes/Rnw/biomart.Rnw
man/readHTAnalystData.Rd
man/wellAnno.Rd
man/convertOldCellHTS.Rd
man/setSettings.Rd
man/oneRowPerId.Rd
man/data-oldKcViabSmall.Rd
man/plateEffects.Rd
man/getZfactor.Rd
man/getEnVisionRawData.Rd
man/updateCellHTS.Rd
man/data-dualCh.Rd
man/writeTab.Rd
man/cellHTS-class.Rd
man/scores2calls.Rd
man/rsa.Rd
man/writeReport.Rd
man/ROC.Rd
man/cellHTS2.Rd
man/summarizeChannels.Rd
man/imageScreen.Rd
man/Data.Rd
man/annotate.Rd
man/data-KcViabSmall.Rd
man/configure.Rd
man/bdgpbiomart.Rd
man/configurationAsScreenPlot.Rd
man/templateDescriptionFile.Rd
man/data-KcViab.Rd
man/Bscore.Rd
man/getTopTable.Rd
man/buildCellHTS2.Rd
man/plate.Rd
man/state.Rd
man/ROC-class.Rd
man/scoreReplicates.Rd
man/convertWellCoordinates.Rd
man/readPlateList.Rd
man/spatialNormalization.Rd
man/gseaModule.Rd
man/plotSpatialEffects.Rd
man/normalizePlates.Rd
man/summarizeReplicates.Rd
man/getMeasureRepAgreement.Rd
man/batch.Rd
man/write.tabdel.Rd
man/intensityFiles.Rd
man/getDynamicRange.Rd
tests/test.R
inst/CITATION
inst/KcCellTiter/Screenlog.txt
inst/KcCellTiter/Plateconf.txt
inst/KcCellTiter/KcCellTiter0707.txt
inst/KcCellTiter/KcCellTiter0607.txt
inst/KcCellTiter/Description.txt
inst/doc/twoChannels.R
inst/doc/twoWay.Rnw
inst/doc/cellhts2Complete.pdf
inst/doc/cellhts2Complete.Rnw
inst/doc/cellhts2.pdf
inst/doc/cellhts2Complete.R
inst/doc/twoWay.pdf
inst/doc/twoWay.R
inst/doc/cellhts2.Rnw
inst/doc/twoChannels.Rnw
inst/doc/cellhts2.R
inst/doc/twoChannels.pdf
inst/KcViab/FT04-G01.txt
inst/KcViab/FT08-G01.txt
inst/KcViab/Platelist.txt
inst/KcViab/FT53-G02.txt
inst/KcViab/FT28-G01.txt
inst/KcViab/FT31-G01.txt
inst/KcViab/FT09-G01.txt
inst/KcViab/GeneIDs_Dm_HFA_1.1.txt
inst/KcViab/FT43-G01.txt
inst/KcViab/FT40-G02.txt
inst/KcViab/FT03-G02.txt
inst/KcViab/FT29-G02.txt
inst/KcViab/FT26-G01.txt
inst/KcViab/FT07-G02.txt
inst/KcViab/FT56-G01.txt
inst/KcViab/FT52-G02.txt
inst/KcViab/FT46-G02.txt
inst/KcViab/Analysis2003.txt
inst/KcViab/FT49-G02.txt
inst/KcViab/FT39-G02.txt
inst/KcViab/FT10-G02.txt
inst/KcViab/FT23-G01.txt
inst/KcViab/FT15-G01.txt
inst/KcViab/FT18-G01.txt
inst/KcViab/FT08-G02.txt
inst/KcViab/FT34-G01.txt
inst/KcViab/FT04-G02.txt
inst/KcViab/FT37-G02.txt
inst/KcViab/FT15-G02.txt
inst/KcViab/FT35-G02.txt
inst/KcViab/FT32-G01.txt
inst/KcViab/FT10-G01.txt
inst/KcViab/FT12-G01.txt
inst/KcViab/old-Plateconf.txt
inst/KcViab/FT23-G02.txt
inst/KcViab/FT13-G02.txt
inst/KcViab/FT27-G02.txt
inst/KcViab/FT49-G01.txt
inst/KcViab/FT20-G01.txt
inst/KcViab/FT09-G02.txt
inst/KcViab/FT14-G01.txt
inst/KcViab/FT38-G02.txt
inst/KcViab/Screenlog.txt
inst/KcViab/FT16-G02.txt
inst/KcViab/FT48-G01.txt
inst/KcViab/FT25-G02.txt
inst/KcViab/FT54-G02.txt
inst/KcViab/FT30-G01.txt
inst/KcViab/FT02-G01.txt
inst/KcViab/FT17-G02.txt
inst/KcViab/FT20-G02.txt
inst/KcViab/FT44-G01.txt
inst/KcViab/FT46-G01.txt
inst/KcViab/FT33-G02.txt
inst/KcViab/FT19-G01.txt
inst/KcViab/FT22-G02.txt
inst/KcViab/FT42-G01.txt
inst/KcViab/FT32-G02.txt
inst/KcViab/FT11-G01.txt
inst/KcViab/FT56-G02.txt
inst/KcViab/FT01-G01.txt
inst/KcViab/FT12-G02.txt
inst/KcViab/FT36-G02.txt
inst/KcViab/FT44-G02.txt
inst/KcViab/FT34-G02.txt
inst/KcViab/FT55-G02.txt
inst/KcViab/FT39-G01.txt
inst/KcViab/FT45-G01.txt
inst/KcViab/FT24-G01.txt
inst/KcViab/FT57-G02.txt
inst/KcViab/FT45-G02.txt
inst/KcViab/FT40-G01.txt
inst/KcViab/FT13-G01.txt
inst/KcViab/FT01-G02.txt
inst/KcViab/Plateconf.txt
inst/KcViab/FT48-G02.txt
inst/KcViab/FT03-G01.txt
inst/KcViab/FT51-G02.txt
inst/KcViab/FT43-G02.txt
inst/KcViab/FT37-G01.txt
inst/KcViab/FT21-G01.txt
inst/KcViab/old-Screenlog.txt
inst/KcViab/FT26-G02.txt
inst/KcViab/FT52-G01.txt
inst/KcViab/FT57-G01.txt
inst/KcViab/FT33-G01.txt
inst/KcViab/FT11-G02.txt
inst/KcViab/FT14-G02.txt
inst/KcViab/FT55-G01.txt
inst/KcViab/FT21-G02.txt
inst/KcViab/FT07-G01.txt
inst/KcViab/FT24-G02.txt
inst/KcViab/FT41-G01.txt
inst/KcViab/FT06-G02.txt
inst/KcViab/FT47-G02.txt
inst/KcViab/FT38-G01.txt
inst/KcViab/FT25-G01.txt
inst/KcViab/FT30-G02.txt
inst/KcViab/FT29-G01.txt
inst/KcViab/FT42-G02.txt
inst/KcViab/FT28-G02.txt
inst/KcViab/FT19-G02.txt
inst/KcViab/FT53-G01.txt
inst/KcViab/FT05-G01.txt
inst/KcViab/FT50-G01.txt
inst/KcViab/FT05-G02.txt
inst/KcViab/FT36-G01.txt
inst/KcViab/FT31-G02.txt
inst/KcViab/FT02-G02.txt
inst/KcViab/FT17-G01.txt
inst/KcViab/FT41-G02.txt
inst/KcViab/FT51-G01.txt
inst/KcViab/FT54-G01.txt
inst/KcViab/FT06-G01.txt
inst/KcViab/FT27-G01.txt
inst/KcViab/FT16-G01.txt
inst/KcViab/Description.txt
inst/KcViab/FT22-G01.txt
inst/KcViab/FT35-G01.txt
inst/KcViab/FT47-G01.txt
inst/KcViab/FT18-G02.txt
inst/KcViab/FT50-G02.txt
inst/glossary/glossary.xml
inst/testscreen/platelist212.txt
inst/testscreen/RA02D2.TXT
inst/testscreen/RB01D1.TXT
inst/testscreen/platelist241.txt
inst/testscreen/platelist222.txt
inst/testscreen/RA02D1.TXT
inst/testscreen/platelist233.txt
inst/testscreen/platelist211.txt
inst/testscreen/RB01D2.TXT
inst/testscreen/description.txt
inst/testscreen/RB02D1.TXT
inst/testscreen/RA01D1.TXT
inst/testscreen/RA01D2.TXT
inst/testscreen/RB02D2.TXT
inst/testscreen/platelist213.txt
inst/testscreen/platelist221.txt
inst/testscreen/screenlog.txt
inst/testscreen/plateconf.txt
inst/DualChannelScreen/Platelist.txt
inst/DualChannelScreen/RB03D1.TXT
inst/DualChannelScreen/RA02D2.TXT
inst/DualChannelScreen/RB01D1.TXT
inst/DualChannelScreen/RA02D1.TXT
inst/DualChannelScreen/Screenlog.txt
inst/DualChannelScreen/RA03D1.TXT
inst/DualChannelScreen/RA03D2.TXT
inst/DualChannelScreen/Plateconf.txt
inst/DualChannelScreen/RB01D2.TXT
inst/DualChannelScreen/RB02D1.TXT
inst/DualChannelScreen/RA01D1.TXT
inst/DualChannelScreen/RB03D2.TXT
inst/DualChannelScreen/RA01D2.TXT
inst/DualChannelScreen/RB02D2.TXT
inst/DualChannelScreen/Description.txt
inst/scripts/makeDatasets.R
inst/scripts/parsePackage.R
inst/scripts/dummy.R
inst/KcViabSmall/Platelist.txt
inst/KcViabSmall/FT03-G02.txt
inst/KcViabSmall/GeneIDs_Dm_HFAsubset_1.1.txt
inst/KcViabSmall/Screenlog.txt
inst/KcViabSmall/FT02-G01.txt
inst/KcViabSmall/FT01-G01.txt
inst/KcViabSmall/FT01-G02.txt
inst/KcViabSmall/Plateconf.txt
inst/KcViabSmall/FT03-G01.txt
inst/KcViabSmall/FT02-G02.txt
inst/KcViabSmall/Description.txt
inst/templates/logoBigNeg.png
inst/templates/rightselbluemid.gif
inst/templates/rightbluesmall.gif
inst/templates/midblue.gif
inst/templates/leftselbluesmall.gif
inst/templates/lupe.png
inst/templates/rightselbluesmall.gif
inst/templates/rightblue.gif
inst/templates/backblue.gif
inst/templates/rightselblue.gif
inst/templates/righttabsel.gif
inst/templates/leftselbluemid.gif
inst/templates/cellHTS.js
inst/templates/midbluemid.gif
inst/templates/checkmark.png
inst/templates/sorttable.js
inst/templates/midselbluemid.gif
inst/templates/logoBig.png
inst/templates/logoBigWhite.png
inst/templates/lupeSmall.png
inst/templates/lupeSmallbw.png
inst/templates/lefttab.gif
inst/templates/textfileIcon.jpg
inst/templates/midselblue.gif
inst/templates/leftbluesmall.gif
inst/templates/back.gif
inst/templates/rightbluemid.gif
inst/templates/leftbluemid.gif
inst/templates/midbluesmall.gif
inst/templates/logoSmall.png
inst/templates/midselbluesmall.gif
inst/templates/backbluesmall.gif
inst/templates/leftselblue.gif
inst/templates/lefttabsel.gif
inst/templates/righttab.gif
inst/templates/cellHTS.css
inst/templates/leftblue.gif
inst/templates/wz_tooltip.js
inst/templates/lupebw.png
inst/templates/bordercorner.gif
inst/templates/failed.png
inst/EnVisionExample/XXX_1500.csv
inst/EnVisionExample/platelist.txt
inst/TwoWayAssay/Platelist.txt
inst/TwoWayAssay/GeneIDs.txt
inst/TwoWayAssay/importData.R
inst/TwoWayAssay/Plateconf.txt
inst/TwoWayAssay/DHA001LU1.CSV
inst/TwoWayAssay/DHA001LU2.CSV
inst/TwoWayAssay/Description.txt
