wellAnno: Access the annotation from a cellHTS object.
In cellHTS2: Analysis of cell-based screens - revised version of cellHTS
Description
Usage
Arguments
Value
Author(s)
References
See Also
Description
These generic functions access the annotation data stored in the featureData slot of an object of
class cellHTS.
Usage
1
2
Arguments
object
Object derived from class cellHTS.
Value
wellAnno returns a factor of length equal to the total number of features (number of plates x number of wells per plate) indicating the contents of the wells. Corresponds to fData(object)[,"controlStatus"].
geneAnno returns a vector of the same length as the number of features in object (number of plates x number of wells per plate) containing the gene IDs used in the screen. This corresponds to the contents of
fData(object)[,"GeneID"].
See cellHTS class for details.
Author(s)
Ligia Bras ligia@ebi.ac.uk
References
Boutros, M., Bras, L.P. and Huber, W. (2006) Analysis of cell-based RNAi screens, Genome Biology 7, R66.
See Also
cellHTS2 documentation built on Nov. 8, 2020, 6 p.m.
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Description Usage Arguments Value Author(s) References See Also
Description
These generic functions access the annotation data stored in the featureData slot of an object of
class cellHTS.
Usage
1 2 |
Arguments
object |
Object derived from class |
Value
wellAnno returns a factor of length equal to the total number of features (number of plates x number of wells per plate) indicating the contents of the wells. Corresponds to fData(object)[,"controlStatus"].
geneAnno returns a vector of the same length as the number of features in object (number of plates x number of wells per plate) containing the gene IDs used in the screen. This corresponds to the contents of
fData(object)[,"GeneID"].
See cellHTS class for details.
Author(s)
Ligia Bras ligia@ebi.ac.uk
References
Boutros, M., Bras, L.P. and Huber, W. (2006) Analysis of cell-based RNAi screens, Genome Biology 7, R66.
See Also
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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