export.mutex: export,mutex

In TRONCO: TRONCO, an R package for TRanslational ONCOlogy

Description

Create an input file for MUTEX (ref: https://code.google.com/p/mutex/ )

Usage

export.mutex(
  x,
  filename = "tronco_to_mutex",
  filepath = "./",
  label.mutation = "SNV",
  label.amplification = list("High-level Gain"),
  label.deletion = list("Homozygous Loss")
)

Arguments

x	A TRONCO compliant dataset.
filename	The name of the file
filepath	The path where to save the file
label.mutation	The event type to use as mutation
label.amplification	The event type to use as amplification (can be a list)
label.deletion	The event type to use as amplification (can be a list)

Value

A MUTEX example matrix

Examples

data(crc_gistic)
dataset = import.GISTIC(crc_gistic)
export.mutex(dataset)

TRONCO documentation built on Nov. 8, 2020, 5:51 p.m.