as.types: as.types

In TRONCO: TRONCO, an R package for TRanslational ONCOlogy

Description

Return the types of events for a set of genes which are in 'x', which should be a TRONCO compliant dataset - see is.compliant.

Usage

as.types(x, genes = NA)

Arguments

x	A TRONCO compliant dataset.
genes	A list of genes to consider, if NA all genes are used.

Value

A matrix with 1 column annotating stages and rownames as sample IDs.

Examples

data(test_dataset)
as.types(test_dataset)
as.types(test_dataset, genes='TET2')

TRONCO documentation built on Nov. 8, 2020, 5:51 p.m.