as.selective.advantage.relations: as.selective.advantage.relations

In TRONCO: TRONCO, an R package for TRanslational ONCOlogy

Description

Returns a dataframe with all the selective advantage relations in a TRONCO model. Confidence is also shown - see as.confidence. It is possible to specify a subset of events or models if multiple reconstruction have been performed.

Usage

as.selective.advantage.relations(
  x,
  events = as.events(x),
  models = names(x$model),
  type = "fit"
)

Arguments

x	A TRONCO model.
events	A subset of events as of as.events(x), all by default.
models	A subset of reconstructed models, all by default.
type	Either Prima Facie ('pf') or fit ('fit') probabilities, 'fit' by default.

Value

All the selective advantage relations in a TRONCO model

Examples

data(test_model)
as.selective.advantage.relations(test_model)
as.selective.advantage.relations(test_model, events=as.events(test_model)[5:15,])
as.selective.advantage.relations(test_model, events=as.events(test_model)[5:15,], type='pf')

TRONCO documentation built on Nov. 8, 2020, 5:51 p.m.