splitPCRhit: splitPCRhit
In SPLINTER: Splice Interpreter of Transcripts
Description
Usage
Arguments
Value
Author(s)
Examples
Description
splits the PCR alignment into the two AS conditions
Usage
1
splitPCRhit(res, hitlist)
Arguments
res
result from getPCRsizes
hitlist
findCompatibleEvents object
Value
list of 2 data.frame objects with isoform name (ID) and
length of PCR product (bp) matching Type 1 or Type 2 transcripts
Author(s)
Diana Low
Examples
1
2
3
## as getPCRsizes gives you all PCR bands when the primers are used,
## splitPCRhit will determine which bands are relevant to the target
relevant_pcr_bands<-splitPCRhit(pcr_result1,compatible_tx)
SPLINTER documentation built on Nov. 8, 2020, 8:13 p.m.
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Description Usage Arguments Value Author(s) Examples
Description
splits the PCR alignment into the two AS conditions
Usage
1 | splitPCRhit(res, hitlist)
|
Arguments
res |
result from |
hitlist |
|
Value
list of 2 data.frame objects with isoform name (ID) and length of PCR product (bp) matching Type 1 or Type 2 transcripts
Author(s)
Diana Low
Examples
1 2 3 | ## as getPCRsizes gives you all PCR bands when the primers are used,
## splitPCRhit will determine which bands are relevant to the target
relevant_pcr_bands<-splitPCRhit(pcr_result1,compatible_tx)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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