getRegionDNA: getRegionDNA
In SPLINTER: Splice Interpreter of Transcripts
Description
Usage
Arguments
Value
Author(s)
Examples
Description
get DNA sequence give a region of interest
Usage
1
getRegionDNA(roi, genome, introns = FALSE)
Arguments
roi
makeROI object
genome
BSgenome object
introns
TRUE/FALSE. whether to include intronic (lowercase) DNA.
By default returns only exonic (uppercase) DNA.
Value
list of
(1) DNA sequence
(2) Junction start (for primer design)
Author(s)
Diana Low
Examples
1
2
3
suppressMessages(library(BSgenome.Mmusculus.UCSC.mm9))
bsgenome<-BSgenome.Mmusculus.UCSC.mm9
getRegionDNA(roi,bsgenome)
SPLINTER documentation built on Nov. 8, 2020, 8:13 p.m.
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Description Usage Arguments Value Author(s) Examples
Description
get DNA sequence give a region of interest
Usage
1 | getRegionDNA(roi, genome, introns = FALSE)
|
Arguments
roi |
|
genome |
BSgenome object |
introns |
TRUE/FALSE. whether to include intronic (lowercase) DNA. By default returns only exonic (uppercase) DNA. |
Value
list of
(1) DNA sequence
(2) Junction start (for primer design)
Author(s)
Diana Low
Examples
1 2 3 | suppressMessages(library(BSgenome.Mmusculus.UCSC.mm9))
bsgenome<-BSgenome.Mmusculus.UCSC.mm9
getRegionDNA(roi,bsgenome)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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