annotateEvents: annotateEvents

In SPLINTER: Splice Interpreter of Transcripts

Description

Gives detailed description of splicing event in terms of splicing outcome post translation. Currently supports exon skipping and intron retention events.

Usage

annotateEvents(
  thedata,
  db,
  bsgenome,
  outputdir,
  full_output = FALSE,
  output_prefix = "results"
)

Arguments

thedata	list. output of extractSpliceEvents.
db	TxDb object
bsgenome	BSGenome object
outputdir	character. relative output directory to current location.
full_output	logical. writes out detailed text report and generate figures.
output_prefix	character. text prefix for full_output files.

Value

list containing information on (1) data.frame with splicing regions (2) splice event type

Author(s)

Diana LOW

SPLINTER documentation built on Nov. 8, 2020, 8:13 p.m.