Files in SPLINTER
Splice Interpreter of Transcripts
NEWS
SPLINTER.Rproj
NAMESPACE
DESCRIPTION
build/vignette.rds
data/splice_data.rda
data/valid_cds.rda
data/theexons.rda
data/compatible_tx.rda
data/region_minus_exon.rda
data/thecds.rda
data/pcr_result1.rda
data/roi.rda
data/valid_tx.rda
data/acceptor.m.rda
data/donor.m.rda
data/compatible_cds.rda
data/primers.rda
data/splice_fasta.rda
R/main_splinter.R
R/primerpcr.R
vignettes/vignette.Rmd
man/findCompatibleEvents.Rd
man/splice_fasta.Rd
man/splitPCRhit.Rd
man/metaremove.Rd
man/findTX.Rd
man/pcr_result1.Rd
man/plot_seqlogo.Rd
man/matchExons.Rd
man/makeROI.Rd
man/roi.Rd
man/acceptor.m.Rd
man/insertRegion.Rd
man/primers.Rd
man/annotateEvents.Rd
man/makeUniqueIDs.Rd
man/eventPlot.Rd
man/checkPrimer.Rd
man/eventOutcomeTranslate.Rd
man/region_minus_exon.Rd
man/callPrimer3.Rd
man/valid_cds.Rd
man/remvalue.Rd
man/removeRegion.Rd
man/shapiroDonor.Rd
man/addEnsemblAnnotation.Rd
man/getRegionDNA.Rd
man/shapiroDensity.Rd
man/thecds.Rd
man/extractSpliceEvents.Rd
man/donor.m.Rd
man/getPCRsizes.Rd
man/extendROI.Rd
man/shapiroAcceptor.Rd
man/theexons.Rd
man/findCompatibleExon.Rd
man/splice_data.Rd
man/psiPlot.Rd
man/valid_tx.Rd
man/compatible_cds.Rd
man/findExactOverlaps.Rd
man/findTermination.Rd
man/extractSpliceSites.Rd
man/eventOutcomeCompare.Rd
man/compatible_tx.Rd
inst/doc/vignette.R
inst/doc/vignette.Rmd
inst/doc/vignette.pdf
inst/extdata/wt_chr14.bam
inst/extdata/skipped_exons.txt
inst/extdata/mt_chr14.bam.bai
inst/extdata/mt_chr14.bam
inst/extdata/wt_chr14.bam.bai
inst/extdata/Mus_musculus.Ensembl.NCBIM37.65.partial.gtf
