Files in MIGSA

Massive and Integrative Gene Set Analysis

R/MIGSAres-genesManipulation.R R/GSEAres.R R/GoAnalysis.R R/data-migsaRes.R R/FitOptions-class.R R/data-bcMigsaRes.R R/MIGSAres.R R/MIGSAres-GoAnalysis.R R/DEnricher.R R/MIGSAres-common.R R/GenesetsRes.R R/Genesets-asGenesets.R R/IGSAinput-getterSetters.R R/SEAparams-class.R R/IGSAinput.R R/FitOptions.R R/Genesets-loadGo.R R/MIGSAmGSZ.R R/ExprData-class.R R/MIGSAres-plotting.R R/GSEAparams.R R/IGSAinput-getDEGenes.R R/MIGSA.R R/GenesetRes.R R/Genesets.R R/GSEAparams-class.R R/IGSAres.R R/MIGSAres-getAdditionalInfo.R R/MIGSAPackage.R R/Genesets-enrichr.R R/SEAres.R R/Genesets-geneSetsFromFile.R R/IGSAinput-class.R R/SEAparams.R R/IGSA.R R/MGSZ.R R/summaryFunctions.R R/MIGSAres-class.R R/MIGSAmultiplot.R R/MIGSAres-setEnrCutoff.R man/MIGSAres-class.Rd man/IGSAinput-class.Rd man/summaryFunctions.Rd man/MIGSAres-getAdditionalInfo.Rd man/IGSAinput-getterSetters.Rd man/MIGSA.Rd man/bcMigsaRes.Rd man/MIGSAmGSZ.Rd man/Genesets-as.Genesets.Rd man/Genesets-geneSetsFromFile.Rd man/IGSAinput-getDEGenes.Rd man/Genesets-enrichr.Rd man/MIGSAres-common.Rd man/MIGSAres-plots.Rd man/FitOptions-class.Rd man/Genesets-loadGo.Rd man/ExprData-class.Rd man/MIGSAres-genesManipulation.Rd man/MIGSAPackage.Rd man/SEAparams-class.Rd man/GSEAparams-class.Rd man/MIGSAres-GoAnalysis.Rd man/migsaRes.Rd man/MIGSAres-setEnrCutoff.Rd tests/runTests.R inst/doc/gettingTcgaData.R inst/doc/gettingTcgaData.pdf inst/doc/gettingPbcmcData.R inst/doc/MIGSA.R inst/doc/gettingPbcmcData.pdf inst/doc/MIGSA.pdf inst/unitTests/test_MIGSA.R