getReadGroupSet: getReadGroupSet function

In GA4GHclient: A Bioconductor package for accessing GA4GH API data servers

Description

Get a read group set by its ID.

Usage

getReadGroupSet(host, readGroupSetId)

Arguments

host	URL of GA4GH API data server.
readGroupSetId	The ID of the ReadGroupSet to be retrieved.

Details

This function requests GET host/readgroupsets/readGroupSetId.

Value

DataFrame object.

References

Official documentation.

See Also

DataFrame, searchReadGroupSets

Examples

host <- "http://1kgenomes.ga4gh.org/"
## Not run: 
datasetId <- searchDatasets(host, nrows = 1)$id
readGroupSetId <- searchReadGroupSets(host, datasetId, nrows = 1)$id
getReadGroupSet(host, readGroupSetId)

## End(Not run)

GA4GHclient documentation built on Nov. 8, 2020, 5:47 p.m.