getFeature: getFeature function

In GA4GHclient: A Bioconductor package for accessing GA4GH API data servers

Description

Get a feature set by its ID (a line of genomic feature file).

Usage

getFeature(host, featureId)

Arguments

host	URL of GA4GH API data server.
featureId	The ID of the feature to be retrieved.

Details

This function requests GET host/features/featureId.

Value

DataFrame object.

References

Official documentation.

See Also

DataFrame, searchFeatures

Examples

host <- "http://1kgenomes.ga4gh.org/"
## Not run: 
datasetId <- searchDatasets(host, nrows = 1)$id
featureSetId <- searchFeatureSets(host, datasetId, nrows = 1)$id
featureId <- searchFeatures(host, featureSetId, nrows = 1)$id
getFeature(host, featureId)

## End(Not run)

GA4GHclient documentation built on Nov. 8, 2020, 5:47 p.m.