GA4GHclient
A Bioconductor package for accessing GA4GH API data servers

Package index
Search the GA4GHclient package
Vignettes
Functions
84
Source code
84
Man pages
40
Home
/
Bioconductor
/
GA4GHclient: A Bioconductor package for accessing GA4GH API data servers
/
Man pages

Man pages for GA4GHclient
A Bioconductor package for accessing GA4GH API data servers

GA4GHclient-packageA Bioconductor package for accessing GA4GH API data server
getBiosamplegetBiosample function
getCallSetgetCallSet function
getDatasetgetDataset function
getExpressionLevelgetExpressionLevel function
getFeaturegetFeature function
getFeatureSetgetFeatureSet function
getIndividualgetIndividual function
getReadGroupSetgetReadGroupSet function
getReferencegetReference function
getReferenceSetgetReferenceSet function
getRnaQuantificationgetRnaQuantification function
getRnaQuantificationSetgetRnaQuantificationSet function
getVariantgetVariant function
getVariantAnnotationSetGets getVariantAnnotationSet function
getVariantSetgetVariantSet function.
HGVSnamesGenerate genomic variant data to HGVS nomenclature
listReferenceBaseslistReferenceBases function
makeVCFFromGA4GHResponsemakeVCFFromGA4GHResponse function
makeVCFHeaderFromGA4GHResponsemakeVCFHeaderFromGA4GHResponse function
searchBiosamplessearchBiosamples function
searchCallSetssearchCallSets function
searchDatasetssearchDatasets function
searchExpressionLevelssearchExpressionLevels function
searchFeaturessearchFeatures function
searchFeatureSetssearchFeatureSets function
searchIndividualssearchIndividuals function
searchPhenotypeAssociationssearchPhenotypeAssociations function
searchPhenotypeAssociationSetssearchPhenotypeAssociationSets function
searchReadGroupSetssearchReadGroupSets function
searchReadssearchReads function
searchReferencessearchReferences function
searchReferenceSetssearchReferenceSets function
searchRnaQuantificationssearchRnaQuantifications function
searchRnaQuantificationSetssearchRnaQuantificationSets function
searchVariantAnnotationssearchVariantAnnotations function
searchVariantAnnotationSetssearchVariantAnnotationSets function
searchVariantssearchVariants function
searchVariantsByGRangessearchVariantsByGranges function
searchVariantSetssearchVariantSets function
GA4GHclient documentation built on Nov. 8, 2020, 5:47 p.m.

R Package Documentation

rdrr.io home R language documentation Run R code online

Browse R Packages

CRAN packages Bioconductor packages R-Forge packages GitHub packages

We want your feedback!

Note that we can't provide technical support on individual packages. You should contact the package authors for that.
GitHub issue tracker
ian@mutexlabs.com
Personal blog

 
Embedding an R snippet on your website

Add the following code to your website.

For more information on customizing the embed code, read Embedding Snippets.

Close