binding.site.list: Binding site predictions

In DBChIP: Differential Binding of Transcription Factor with ChIP-seq

Description

Binding site predictions for emb and L1 conditions in a study of transcription factor PHA-4/FOXA in C.elegans

Usage

data("PHA4")

Format

List of 2 elements: emb and L1. Each element is a data.frame with fields: chr, strand and weight (optional).

Details

Weight represents a measure of strength of the binding, for example, the number of reads in the peak.

Source

Zhong et al. (2010), Genome-wide identification of binding sites defines distinct functions for Caenorhabditis elegans PHA-4/FOXA in development and environmental response, PLoS Genetics, 6, e1000848.

See Also

PHA4

Examples

data(PHA4)
names(binding.site.list)
head(binding.site.list[["emb"]])

DBChIP documentation built on Nov. 8, 2020, 8:27 p.m.