Description Usage Arguments See Also
Plot the coverage profile of differentially bound peaks
1 |
rept |
a data.frame as the result of |
dat |
a list with the following items: chip.list, input.list, matching.input.names, norm.factor.vec. Description of the items can be found in the return value of |
lib.size |
a vector of library size of each ChIP sample. Used to scale profiles so that they are comparable. |
w |
half window size to plot around the binding sites. |
ext |
extension size for each read. Each read is extended from its 5' end by |
combine.rep |
logical, whether to combine replicates for the plot. Can be useful when there are too many replicates to plot. |
cap |
the maximum number of reads per nucleotide allowd to plot. |
n.row.per.page |
the maximum number of tracks (rows) per page. |
caption |
additional caption to appear on the title besides the location. |
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