PHA4: ChIP-seq data of transcription factor PHA-4/FOXA in...

In DBChIP: Differential Binding of Transcription Factor with ChIP-seq

Description

This data set contains parts of ChIP-seq data of transcription factor PHA-4/FOXA in C.elegans. ChIP and control data and identified binding sites in chromosome I with position < 0.9M bp are included.

Usage

data("PHA4")

Format

PHA4 has three elements:

• binding.site.list a list of binding sites for embryonic and L1 conditions

• chip.data.list a list of ChIP reads data for embryonic and L1 conditions

• input.data.list a list of control reads data for embryonic and L1 conditions

• conds a vector of conditions of ChIP libraries.

References

Zhong et al. (2010), Genome-wide identification of binding sites defines distinct functions for Caenorhabditis elegans PHA-4/FOXA in development and environmental response, PLoS Genetics, 6, e1000848.

See Also

DBChIP

DBChIP documentation built on Nov. 8, 2020, 8:27 p.m.