updateCentroidsPaths: updateCentroidsPaths

In CONFESS: Cell OrderiNg by FluorEScence Signal

Description

It updates the path sorted clusters after re-estimation by change-point analysis.

Usage

updateCentroidsPaths(data, estimates, path.type)

Arguments

data	List. A list of adjusted fluorescence signals.
estimates	List. A list of sorted Ch2-Ch3 transformed fluorescence signals with their assocuated change-points.
path.type	Character vector. A user-defined vector that characterizes the cell progression dynamics. The first element can be either "circular" or "A2Z" or "other". If "circular" the path progression is assummed to exhibit a circle-like behavior. If "A2Z" the path is assumed to have a well-defined start and a well-defined end point (e.g. a linear progression). If "other" the progression is assumed to be arbitrary without an obvious directionality.

Value

A list of adjusted fluorescence signals and the updated path after the change-point analysis

CONFESS documentation built on Nov. 8, 2020, 6:05 p.m.