filled.contour3: filled.contour3

In CONFESS: Cell OrderiNg by FluorEScence Signal

Description

It generates a contour plot of a channel specific spot. It is a modification by Ian Taylor of the filled.contour() to remove the key and facilitate overplotting with contour(). It has been further modified by Carey McGilliard and Bridget Ferris to allow multiple plots on one page http://wiki.cbr.washington.edu/qerm/sites/qerm/images/1/16/Filled.contour3.R We have added some extra parameters to adapt the function to our application.

Usage

filled.contour3(x = seq(0, 1, length.out = nrow(z)), y = seq(0, 1,
  length.out = ncol(z)), z, xlim = range(x, finite = TRUE),
  ylim = range(y, finite = TRUE), zlim = range(z, finite = TRUE),
  levels = pretty(zlim, nlevels), nlevels = 20,
  color.palette = cm.colors, col = color.palette(length(levels) - 1),
  joinedPlots, plot.title, plot.axes, key.title, key.axes, asp = NA,
  xaxs = "i", yaxs = "i", las = 1, axes = TRUE,
  frame.plot = axes, mar, ...)

Arguments

x, y, z	Numeric vectors. Some plot coordinates.
...	Other parameters of the function.

Value

A plotted spot

CONFESS documentation built on Nov. 8, 2020, 6:05 p.m.