periodicity_filter_uORFs: Run Multitaper tests on a set of ORFs
In zslastman/RiboStan: Estimates Isoform Specific RPF Footprint Densities
periodicity_filter_uORFs R Documentation
Run Multitaper tests on a set of ORFs
Description
Run Multitaper tests on a set of ORFs
Usage
periodicity_filter_uORFs(psites, anno, remove = TRUE, n_cores = 1)
Arguments
psites
GRanges object with psite information
anno
annotation object
remove
whether to remove non-peridic uORFs
n_cores
number of cores to use
Details
This function applies a multitaper test to
Value
a numeric vector with the spectral coefficient at 0.333... and the pvalue for the test
Author(s)
Dermot Harnett, dermot.p.harnett@gmail.com
Examples
data(chr22_anno)
data(rpfs)
data(offsets_df)
psites <- get_psite_gr(rpfs, offsets_df, chr22_anno)
filteredanno <- periodicity_filter_uORFs(psites, chr22_anno)
zslastman/RiboStan documentation built on June 12, 2024, 1:59 a.m.
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| periodicity_filter_uORFs | R Documentation |
Run Multitaper tests on a set of ORFs
Description
Run Multitaper tests on a set of ORFs
Usage
periodicity_filter_uORFs(psites, anno, remove = TRUE, n_cores = 1)
Arguments
psites |
GRanges object with psite information |
anno |
annotation object |
remove |
whether to remove non-peridic uORFs |
n_cores |
number of cores to use |
Details
This function applies a multitaper test to
Value
a numeric vector with the spectral coefficient at 0.333... and the pvalue for the test
Author(s)
Dermot Harnett, dermot.p.harnett@gmail.com
Examples
data(chr22_anno)
data(rpfs)
data(offsets_df)
psites <- get_psite_gr(rpfs, offsets_df, chr22_anno)
filteredanno <- periodicity_filter_uORFs(psites, chr22_anno)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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