get_offsets: Get Offsets by maximizing p-sites within the CDS
In zslastman/RiboStan: Estimates Isoform Specific RPF Footprint Densities
get_offsets R Documentation
Get Offsets by maximizing p-sites within the CDS
Description
Get Offsets by maximizing p-sites within the CDS
Usage
get_offsets(input, anno, method = "cds_incl")
Arguments
input
GRanges object with RPFs or a bam file with RPFs
anno
annotation object
method
Method for p-site determination. Defaults to 'cds_incl'
Value
a dataframe with p-site offsets per readlength
Author(s)
Dermot Harnett, dermot.p.harnett@gmail.com
Examples
cov <- get_readgr(ribobam, anno)
offsets_df <- get_offsets(cov, anno)
data(chr22_anno)
data(rpfs)
data(offsets_df)
testoffsets_df <- get_offsets(rpfs, chr22_anno)
zslastman/RiboStan documentation built on June 12, 2024, 1:59 a.m.
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| get_offsets | R Documentation |
Get Offsets by maximizing p-sites within the CDS
Description
Get Offsets by maximizing p-sites within the CDS
Usage
get_offsets(input, anno, method = "cds_incl")
Arguments
input |
GRanges object with RPFs or a bam file with RPFs |
anno |
annotation object |
method |
Method for p-site determination. Defaults to 'cds_incl' |
Value
a dataframe with p-site offsets per readlength
Author(s)
Dermot Harnett, dermot.p.harnett@gmail.com
Examples
cov <- get_readgr(ribobam, anno)
offsets_df <- get_offsets(cov, anno)
data(chr22_anno)
data(rpfs)
data(offsets_df)
testoffsets_df <- get_offsets(rpfs, chr22_anno)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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