rgDataSet-class: Class '"rgDataSet"'

In xuz1/ENmix: Quality control and analysis tools for Illumina DNA methylation BeadChip

Class "rgDataSet"

Description

A class for storing Illumina methylation array raw intensity data of two color channels, and probe annotation infomation.

Usage

rgDataSet(Red = new("matrix"), Green = new("matrix"),
    NBeads = new("matrix"),rowData=new("DataFrame"),ictrl= new("DataFrame"),...)

Arguments

Red	A matrix of Red channel intensity values with row for methylation probes and column for samples
Green	A matrix of Green channel intensity values with row for methylation probes and column for samples
NBeads	A matrix contains the number of beads used to generate intensity values on the Red and Green channels.
rowData	A dataframe contains probe annotation information
ictrl	A dataframe contais detailed information for Illumina internal control probes
...	other arguments for class SummarizedExperiment

Value

An object of class rgDataSet

Examples

showClass("rgDataSet")

xuz1/ENmix documentation built on Aug. 5, 2023, 7:11 a.m.