predSex: Estimating sample sex
In xuz1/ENmix: Quality control and analysis tools for Illumina DNA methylation BeadChip
predSex R Documentation
Estimating sample sex
Description
Estimating sample sex based on methylation data
Usage
predSex(mdat, cutoff = 2)
Arguments
mdat
An object of class MethDataSet or rgDataSet.
cutoff
The difference in log2 total intensity between X and Y
chromosomes
Details
Estimation of sex is based on the difference of log2 median total
intensity measures on the X and Y chromosomes.
Author(s)
Zongli Xu
Examples
if (require(minfiData)) {
path <- file.path(find.package("minfiData"),"extdata")
rgSet <- readidat(path = path,recursive = TRUE)
sex=predSex(rgSet)
}
xuz1/ENmix documentation built on Aug. 5, 2023, 7:11 a.m.
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| predSex | R Documentation |
Estimating sample sex
Description
Estimating sample sex based on methylation data
Usage
predSex(mdat, cutoff = 2)
Arguments
mdat |
An object of class |
cutoff |
The difference in log2 total intensity between X and Y chromosomes |
Details
Estimation of sex is based on the difference of log2 median total intensity measures on the X and Y chromosomes.
Author(s)
Zongli Xu
Examples
if (require(minfiData)) {
path <- file.path(find.package("minfiData"),"extdata")
rgSet <- readidat(path = path,recursive = TRUE)
sex=predSex(rgSet)
}R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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