methDataSet-class: Class '"methDataSet"'

In xuz1/ENmix: Quality control and analysis tools for Illumina DNA methylation BeadChip

Class "methDataSet"

Description

A class for storing Illumina methylation array methylated and unmethylated intensity data, and CpG annotation infomation.

Usage

methDataSet(Meth = new("matrix"), Unmeth = new("matrix"),
    rowData=new("DataFrame"),...)

Arguments

Meth	A matrix of methylated intensity values with row for CpGs and column for samples
Unmeth	A matrix of unmethylated intensity values with row for CpGs and column for samples
rowData	A dataframe contains CpG annotation information
...	Other arguments for class SummarizedExperiment

Details

CpG annotation information is incorporated in the object, and can be extracted using command rowData

Value

An object of class methDataSet

Examples

showClass("methDataSet")

xuz1/ENmix documentation built on Aug. 5, 2023, 7:11 a.m.