cutLinkDf: Create a cut data frame with information on links

In tnaake/MetCirc: Navigating mass spectral similarity in high-resolution MS/MS metabolomics data metabolomics data

Create a cut data frame with information on links

Description

Create a cut link data frame

Usage

cutLinkDf(linkDf, type = c("all", "inter", "intra"))

Arguments

linkDf	data.frame, that gives per each row information on linked features
type	character, one of "all", "inter" or "intra"

Details

This function is used to truncate features from linkDf. If type = "all", linkDf will not be changed; if type = "inter" the returned linkDf will only contain entries of links which are between groups and not inside groups; contrary to that, if type = "intra" the returned linkDf will only contain entries of links which are inside groups and not between groups.

Value

cutLinkDf returns a data.frame that gives per each row information on linked features

Author(s)

Thomas Naake, [e-mail]

Examples

data("spectra", package = "MetCirc")
data("similarityMat", package = "MetCirc")
linkDf <- createLinkDf(similarityMatrix = similarityMat,
    sps = sps_tissue, condition = c("SPL", "LIM", "ANT", "STY"),
    lower = 0.75, upper = 1)
cutLinkDf(linkDf = linkDf, type = "all")

tnaake/MetCirc documentation built on Nov. 3, 2024, 11:16 a.m.