rnaseq-brain: RNA-seq, brain dataset results

In stephaniehicks/benchmarkfdrData2019: Data and Benchmarking Results from Korthauer and Kimes et al. (2019)

RNA-seq, brain dataset results

Description

Results for case study on differential gene expression analysis between two brain regions (nucleus accumbens and putamen) using data from the GTEx project described in Korthauer and Kimes et al. (2019). Differential expression was tested using DESeq2.

Arguments

metadata

logical whether to load metadata (TRUE) or full resource (FALSE). (default = FALSE)

Details

Results for this case study include:

• brain-benchmark: using mean counts as covariate.

• brain-uninf-benchmark: using uninformative covariate.

See Also

rnaseq-mir200c

Examples

`brain-benchmark`(metadata = TRUE)

## Not run: 
`brain-benchmark`()
`brain-uninf-benchmark`()

## End(Not run)

stephaniehicks/benchmarkfdrData2019 documentation built on April 13, 2025, 9:02 p.m.