chipseq-cbp: ChIP-seq, CBP dataset results

In stephaniehicks/benchmarkfdrData2019: Data and Benchmarking Results from Korthauer and Kimes et al. (2019)

ChIP-seq, CBP dataset results

Description

Results for case study on differential peak calling in CREB-binding protein (CBP) knockout and wild-type mice described in Korthauer and Kimes et al. (2019). Analyses were performed using the csaw package.

Arguments

metadata

logical whether to load metadata (TRUE) or full resource (FALSE). (default = FALSE)

Details

Results for this case study include:

• cbp-csaw-benchmark: using csaw with region width as covariate.

• cbp-csaw-uninf-benchmark: using csaw with uninformative covariate.

• cbp-csaw-cov-benchmark: using csaw with mean coverage as covariate.

See Also

chipseq-h3k4me3

Examples

`cbp-csaw-benchmark`(metadata = TRUE)

## Not run: 
`cbp-csaw-benchmark`()
`cbp-csaw-uninf-benchmark`()
`cbp-csaw-cov-benchmark`()

## End(Not run)

stephaniehicks/benchmarkfdrData2019 documentation built on April 13, 2025, 9:02 p.m.