API for saezlab/ligrec_decoupler
LIANA: a LIgand-receptor ANalysis frAmework
| Global functions | |
|---|---|
| .antilog1m | Man page |
| .assign_to_filter | Source code |
| .bind_dicts | Source code |
| .conn_create | Source code |
| .create_row_dict | Source code |
| .filter_sce | Source code |
| .gen_noise | Source code |
| .generate_complex_dict | Source code |
| .get_ident | Source code |
| .handle_complexes | Source code |
| .join_meta | Source code |
| .liana_convert | Source code |
| .rank_matrix | Man page |
| .score_housekeep | Source code |
| .score_specs | Source code |
| .sp_costrain | Man page |
| FormatConnectome | Man page Source code |
| FormatNatmi | Man page Source code |
| FormatSCA | Man page Source code |
| FormatSquidpy | Source code |
| FormatiTALK | Man page |
| ScoreSpecifics-class | Man page |
| account_missing | Source code |
| assign_ligrecs | Man page |
| assign_lr_weights | Man page Source code |
| calculate_gini | Man page |
| call_cellchat | Man page Source code |
| call_connectome | Man page Source code |
| call_italk | Man page Source code |
| call_natmi | Man page Source code |
| call_sca | Man page Source code |
| call_squidpy | Man page Source code |
| cellchat_formatDB | Man page Source code |
| cellphonedb_score | Man page Source code |
| check_if_dissociated | Man page |
| chord_freq | Man page |
| compile_ligrec | Man page Source code |
| compute_mi_dist | Man page Source code |
| compute_nst_from_matrix | Man page Source code |
| compute_nst_scores | Man page Source code |
| compute_pem_scores | Man page Source code |
| conn_formatDB | Man page Source code |
| connectome_score | Source code |
| cytotalk_score | Man page Source code |
| decomplexify | Man page |
| decompose_tensor | Man page |
| filter_nonabundant_celltypes | Man page Source code |
| format_c2c_factors | Source code |
| generate_homologs | Man page Source code |
| generate_lr_geneset | Man page |
| generate_orthologs | Man page Source code |
| genesymbol_to_uniprot | Man page |
| get_abundance_summary | Man page Source code |
| get_c2c_factors | Man page Source code |
| get_cellcall | Man page |
| get_cellchat_missing | Man page |
| get_cellphonedb | Source code |
| get_connectome | Man page Source code |
| get_curated_omni | Man page |
| get_cytotalk | Source code |
| get_homologene_dict | Man page Source code |
| get_logfc | Man page Source code |
| get_lr_resources | Man page Source code |
| get_natmi | Man page Source code |
| get_partners | Man page |
| get_permutations | Man page Source code |
| get_sca | Man page Source code |
| get_up_dict | Man page |
| heat_freq | Man page |
| join_means | Man page |
| liana_aggregate | Man page Source code |
| liana_bysample | Man page Source code |
| liana_call | Man page Source code |
| liana_defaults | Man page Source code |
| liana_dotplot | Man page Source code |
| liana_heatmap | Man page |
| liana_message | Man page Source code |
| liana_pipe | Man page Source code |
| liana_prep | Man page |
| liana_prep.Seurat | Source code |
| liana_prep.SingleCellExperiment | Source code |
| liana_scores | Man page Source code |
| liana_tensor_c2c | Man page Source code |
| liana_wrap | Man page Source code |
| logfc_score | Source code |
| map_custom | Man page |
| mean0 | Man page |
| mean_permute | Man page |
| min0 | Man page |
| minmax | Man page Source code |
| missing_subunits_to0 | Source code |
| natmi_score | Source code |
| omni_to_NATMI | Source code |
| omnipath_partners | Man page |
| pems_from_means | Source code |
| plot_abundance_summary | Man page Source code |
| plot_c2c_cells | Man page |
| plot_c2c_overview | Man page Source code |
| plot_context_boxplot | Man page |
| plot_context_heat | Man page |
| plot_lr_heatmap | Man page |
| preprocess_scores | Man page |
| rank_aggregate | Man page |
| rank_method | Man page |
| reassign_params | Source code |
| recode.character2 | Man page Source code |
| recomplexify | Man page Source code |
| sca_formatDB | Man page Source code |
| sca_score | Source code |
| select_resource | Man page |
| show_homologene | Man page Source code |
| show_methods | Man page |
| show_resources | Man page |
