rank_method: Helper function to rank each method
In saezlab/ligrec_decoupler: LIANA: a LIgand-receptor ANalysis frAmework
rank_method R Documentation
Helper function to rank each method
Description
Helper function to rank each method
Usage
rank_method(liana_res, method_name, mode = "specificity")
Arguments
liana_res
liana_results for a single method
method_name
name of the method
mode
ranking to be carried out. Accepted modes are 'specificity'
and 'magnitude'. The first is meant to reflect the specificity of interactions
across all cell types, while the latter typically reflects how highly expressed
is a given interaction.
Details
this function makes use of liana's 'liana:::.score_specs' and
'liana:::.score_housekeep' functions.
saezlab/ligrec_decoupler documentation built on Aug. 10, 2024, 8:56 a.m.
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| rank_method | R Documentation |
Helper function to rank each method
Description
Helper function to rank each method
Usage
rank_method(liana_res, method_name, mode = "specificity")
Arguments
liana_res |
liana_results for a single method |
method_name |
name of the method |
mode |
ranking to be carried out. Accepted modes are 'specificity' and 'magnitude'. The first is meant to reflect the specificity of interactions across all cell types, while the latter typically reflects how highly expressed is a given interaction. |
Details
this function makes use of liana's 'liana:::.score_specs' and 'liana:::.score_housekeep' functions.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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