dorothea_mm_pancancer: Mouse DoRothEA (pancancer)
In saezlab/dorothea: Collection Of Human And Mouse TF Regulons
dorothea_mm_pancancer R Documentation
Mouse DoRothEA (pancancer)
Description
A table reporting signed human TF-target interactions. The difference to
"dorothea_mm" is that TGCA gene expression data was used instead of GTEx to
infer the networks with ARACNE.This database covers in total 1096 TFs
targeting 17,695 genes with 187,955 unique interactions. In addition, each
TF is accompanied with an empirical confidence level that was derived from
the number of supporting evidences for this TF/interaction. The range is
from A (high quality) to E (low quality).
Format
A table of mouse TF-target interactions:
- tf
TF identifier as MGI symbols
- confidence
summary confidence score classifying regulons based on
their quality
- target
target identifier as MGI symbols
- mor
mode of regulation indicating the effect of a TF on the
target
Source
saezlab/dorothea documentation built on Feb. 24, 2024, 8:12 p.m.
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| dorothea_mm_pancancer | R Documentation |
Mouse DoRothEA (pancancer)
Description
A table reporting signed human TF-target interactions. The difference to "dorothea_mm" is that TGCA gene expression data was used instead of GTEx to infer the networks with ARACNE.This database covers in total 1096 TFs targeting 17,695 genes with 187,955 unique interactions. In addition, each TF is accompanied with an empirical confidence level that was derived from the number of supporting evidences for this TF/interaction. The range is from A (high quality) to E (low quality).
Format
A table of mouse TF-target interactions:
- tf
TF identifier as MGI symbols
- confidence
summary confidence score classifying regulons based on their quality
- target
target identifier as MGI symbols
- mor
mode of regulation indicating the effect of a TF on the target
Source
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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